Cognitive Science 276 -- Neuroimaging (Fall 2003)

FALL 2003 (current/latest version: here)

Professor:
Marty Sereno -- sereno@cogsci.ucsd.edu
class time (updated) -- Mon/Wed/Fri 10:00-11:00 AM, CSB 180

Required Readings:
Buxton, R. (2001) Introduction to Functional Magnetic Resonance Imaging
Sereno Lecture Notes (54-page PDF [8MB, last update: 11/3/03] -- print 10 pages at a time, or use single-page links below)
[PDF currently complete only to 8th week -- 15 pages to be added]
Additional journal articles: below

Assignments:
Homework #1 (due 11/14/03, paper printout, incl. code and graphs)
Homework #2 (due 12/11/03, paper printout, incl. code and graphs, brain image here )
final paper (10 pages minimum)

Description and Prerequisites:

Lecture Topics: Fall 2003 -- this page: http://cogsci.ucsd.edu/~sereno/276/
First class -- Fri, Sept 26, 10:00 AM, CSB 180 Buxton Chap. 3, 6
Week of 9/29 -- MRI Signals I -- Buxton Chap. 4, 7
Week of 10/6 -- MRI Signals II -- Buxton Chap. 4, 8
Week of 10/13 -- Fourier Transform, Slice Selection -- Buxton Chap. 5, 10
Week of 10/20 -- MRI Image Formation -- Buxton Chap. 5, 10
Week of 10/27 -- Image Reconstruction, Structural Pulse Sequences -- Buxton Chap. 11
Week of 11/3 -- Functional MRI, Artifacts, Correction -- Buxton Chap. 12, 16, 17
Week of 11/10 -- Diffusion and Perfusion -- Buxton Chap. 9, 15
Week of 11/17 -- Surface-Based Methods and Cortical Mapping -- Cortical Surface & Visual Mapping PDFs
Week of 11/24 -- Sources of EEG/MEG
Week of 12/1 -- EEG/MEG Localization

READINGS
Math Resources:
MATLAB Primer

Web Courses:
Hornak, J.P. (1996-2002) The Basics of MRI
Charles Mistretta (1998) A Traveler's Guide to K-Space
Jody Culham (2002) fMRI for Dummies
Carl D. Gregory (1998) MRI Artifact Gallery

MRI Books:
Buxton, R. (2002) Introduction to Functional Magnetic Resonance Imaging
Haacke, E.M., R.W. Brown, M.R. Thompson, and R. Venkatesan (1999) Magnetic Resonance Imaging
Hashemi, R.H. and W.G. Bradley (1997) MRI: The Basics
Liang, Z-P. and P.C Lauterbur (1999) Principles of Magnetic Resonance Imaging
Nishimura, D.G. (1996) Principles of Magnetic Resonance Imaging (available from author)

Pulse Sequence Papers:
QUIPSS II
Turbo ASL
Spherical Navigators
SENSE
SPACE RIP
Inverse Method Distortion Correction

MRI Data Analysis Papers:
Estimation, and Predictability
Detection, Estimation, and Predictability
3dDeconvolve

Visual Mapping Papers:
Analysis of Retinotopy
Human Visual Areas
Visual Mapping Review
Retinotopy Step-by-Step
Human V1
Human V3A
Ipsilateral Representation
Human V4
Human V7
Human V8
Human MT/MST
Human LIP Map
Visual Tracking

Auditory Mapping Papers:
Auditory Phase-Map

Dale and Sereno, 93:(cortical surface, EEG/MEG inverse)
manuscript (equations more readable), or journal scan

Cortical Surface Reconstruction Papers:
Segmentation and Reconstruction
Inflation, Flattening, Coordinates
Inter-Subject Morphing
Cortical Thickness
Topology Repair
Montreal Cortical Surface Method
Van Essen Surface-Based Atlas

EEG and MEG Localization Papers:
fMRI/EEG Attention
Noise Sensitivity Normalized Inverse--Data
Noise Sensitivity Normalized Inverse--Models
Mapping the Conductivity Tensor
N400 Localization

Intracortical EEG Papers:
Surface Plus Laminar Analysis
3D CSD of Rat BAER
last modified: October 6, 2003
Scanned class notes (link above) © 2003 Martin I. Sereno.
Don't redistribute without attribution and link to this page.
Supported by NSF 0224321.