Cognitive Science 276--Neuroimaging
WINTER 2002 (current/latest version:
here)
Professor:
Marty Sereno -- sereno@cogsci.ucsd.edu
class: MWF 10:10-11:00 AM, CSB 180 (re-scheduled time)
Required Readings:
Buxton, R. (2001) Introduction to Functional Magnetic Resonance Imaging
Sereno Lecture Notes (54-page pdf [8M]--print only 10 pages at a time!)
Sereno Lecture Notes--Surface-Based and EEG/MEG (pdf under construction)
Additional readings:
below
Assignments:
final paper
Description and Prerequisites:
This course is an introduction to structural and functional MRI,
cortical-surface based analysis, and the neural basis, recording,
and localization of EEG and MEG signals. Although it does not
require a background in linear algebra, electromagnetism, and the
Fourier transform, we plan we plan to delve more deeply into the
equations behind MRI (and EEG, MEG, and surface reconstruction)
than what is found, for example, in the book, MRI: The Basics
(1997), by Hashemi and Bradley. There is also a Bioengineering MRI course
taught by Tom Liu (MWF 1:25-2:15 PM, Center 224A), another member of
the new UCSD MRI center, that focuses exclusively on MRI (structural
and functional) and assumes a stronger mathematical background.
Lecture Topics: (Winter 2002 -- this page:
http://cogsci.ucsd.edu/~sereno/276/syll.html)
Week of 1/7 -- MRI Signals I
Week of 1/14 -- MRI Signals II
Week of 1/21 -- Fourier Transform, Slice Selection
Week of 1/28 -- MRI Image Formation
Week of 2/4 -- Image Reconstruction, Structural Pulse Sequences
Week of 2/11 -- Functional MRI, Artifacts, Correction
Week of 2/18 -- Diffusion and Perfusion
Week of 2/25 -- Surface-Based Methods and Cortical Mapping
Week of 3/4 -- Sources of EEG/MEG
- Intracortical Circuits
- 1D, 2D, and 3D Current Source Density
- Intracortical Basis of EEG/MEG
Week of 3/11 -- EEG/MEG Localization
-
- Forward Solution--Analytic
- Forward Solution--Boundary Element Method
- Minimum Norm Solution
- Using Spatiotemporal Covariance of Sensors (MUSIC)
- Noise-weighted Minimum Norm
- Non-linear Fitting of Moveable Dipoles
- fMRI-weighted Inverse Solutions
READINGS
Web Courses:
Hornak, J.P. (1996-2000) The Basics of MRI
Charles Mistretta (1998) A Traveler's Guide to K-Space
Jody Culham (2002) fMRI for Dummies
Carl D. Gregory (1998) MRI Artifact Gallery
MRI Books:
Buxton, R. (2002) Introduction to Functional Magnetic Resonance Imaging
Haacke, E.M., R.W. Brown, M.R. Thompson, and R. Venkatesan (1999) Magnetic Resonance Imaging
Hashemi, R.H. and W.G. Bradley (1997) MRI: The Basics
Liang, Z-P. and P.C Lauterbur (1999) Principles of Magnetic Resonance Imaging
Nishimura, D.G. (1996) Principles of Magnetic Resonance Imaging
Pulse Sequence Papers:
QUIPSS II
Turbo ASL
Spherical Navigators
SENSE
SPACE RIP
Inverse Method Distortion Correction
Visual Mapping Papers:
Analysis of Retinotopy
Original Human Visual Areas
Visual Mapping Review
Human V1
Human V3A
Ipsilateral Representation
Human V4
Human V7
Human V8
Human MT/MST
Human LIP Map
Visual Tracking
Dale and Sereno, 93:
manuscript (equations more readable),
journal scan
Cortical Surface Reconstruction Papers:
Segmentation and Reconstruction
Inflation, Flattening, Coordinates
Inter-Subject Morphing
Cortical Thickness
Topology Repair
Montreal Cortical Surface Method
Van Essen Surface-Based Atlas
EEG and MEG Localization Papers:
fMRI/EEG Attention
Noise Sensitivity Normalized Inverse--Data
Noise Sensitivity Normalized Inverse--Models
Mapping the Conductivity Tensor
N400 Localization
Intracortical EEG Papers:
Surface Plus Laminar Analysis
3D CSD of Rat BAER
last modified: March 13, 2002
Scanned class notes links above © 2002 Martin I. Sereno.
Don't redistribute without attribution and link to this page.
