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 The SubjectsTools->Make Origdirs,Find/Copy Raw
 menu creates mri/orig subdirs, and copies
 converted-to-COR format 3d scans into them.
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Getting Started

This panel is designed to be the first panel
accessed after running File -> New Subject.  It
requires a virgin subject directory tree
containing no mri/orig subdirectories.   If
mri/orig subdirectories have already been created
(even if they are empty), you won't even be able
to open this panel.   First manually remove
existing orig subdirectories.

Click the Find Raw Structs button at the top of
the panel to begin.  Click SETUP NEW ORIGDIR one
or more times to create blank scan configuration
lines.  DELETE LAST ORIGDIR deletes the most
recently added line, whether or not you have
altered it.

Create mri/origSubdirectdories and Find Raw Scans

The proposed mri/orig subdirectories are named
mprage1, mprage2, etc, but can be renamed to
anything unique.

For each new scan directory, click the FIND
button to locate a single raw structural scan.
Subsequent FIND button clicks start the directory
browser in the parent directory of the most
recently selected Raw Scan.

Once you are satisfied with the mapping between
scan directory names and raw scan names, click
MAKE ORIGDIRS at the top of the panel.  If all
the fields are complete, the name list is unique,
and the raw scans all exist, the new mri/orig
subdirectories should appear on the left of this
panel (if not, fix things and click MAKE ORIGDIRS
again).  Text files documenting the raw scans
will be made in each of the scan directories.  If
you want to redo this, remove the just-created
mri/orig subdirectories (which will contain only
the small text files).

Copy Raw Scans

When the MAKE ORIGDIRS button is clicked
successfully, default unique scan names will be
inserted into the right-most column (New Scan
Names).

Finally, click COPY-RAW at the upper right.
After checking the list of new names for
completeness and uniqueness, this copies the raw
structural scans into each mri/orig subdirectory.
